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    SRF6 STRUBBELIG-receptor family 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841811, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRF6
    Official Full Name
    STRUBBELIG-receptor family 6
    Primary source
    TAIR:AT1G53730
    Locus tag
    AT1G53730
    See related
    Araport:AT1G53730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22G10.31; F22G10_31; STRUBBELIG-receptor family 6
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    Genomic context

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    See SRF6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (20061405..20065713)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene ROTUNDIFOLIA like 9 Neighboring gene cyclophilin 59 Neighboring gene regulatory particle triple-A 1A Neighboring gene K+-H+ exchange-like protein Neighboring gene O-fucosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084247.2
    NM_104251.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    STRUBBELIG-receptor family 6
    NP_001077716.1
    • STRUBBELIG-receptor family 6 (SRF6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 7 (TAIR:AT3G14350.1); Has 158289 Blast hits to 119426 proteins in 3465 species: Archae - 133; Bacteria - 16895; Metazoa - 46669; Fungi - 8281; Plants - 68201; Viruses - 301; Other Eukaryotes - 17809 (source: NCBI BLink).
    NP_175777.1
    • STRUBBELIG-receptor family 6 (SRF6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 7 (TAIR:AT3G14350.1); Has 158312 Blast hits to 119064 proteins in 3476 species: Archae - 117; Bacteria - 16807; Metazoa - 46536; Fungi - 8480; Plants - 68549; Viruses - 305; Other Eukaryotes - 17518 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20061405..20065713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084247.2 → NP_001077716.1  STRUBBELIG-receptor family 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WPF2, A0A654EI68, A8MQH3
      Conserved Domains (6) summary
      smart00220
      Location:416 → 683
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd00116
      Location:79 → 225
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:98 → 119
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:28 → 69
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:118 → 202
      LRR_8; Leucine rich repeat
      cl21453
      Location:422 → 683
      PKc_like; Protein Kinases, catalytic domain

    2. NM_104251.4 → NP_175777.1  STRUBBELIG-receptor family 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175777.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C8M8, Q9C8M9
      UniProtKB/TrEMBL
      A0A5S9WPF2, A0A654EI68, C0LGH0
      Conserved Domains (6) summary
      smart00220
      Location:416 → 682
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd00116
      Location:79 → 225
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:98 → 119
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:28 → 69
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:118 → 202
      LRR_8; Leucine rich repeat
      cl21453
      Location:422 → 682
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8M9.1

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