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    TRFL5 TRF-like 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838141, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRFL5
    Official Full Name
    TRF-like 5
    Primary source
    TAIR:AT1G15720
    Locus tag
    AT1G15720
    See related
    Araport:AT1G15720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H2.6; F7H2_6; TRF-like 5
    Summary
    Arabidopsis thaliana myb family transcription factor (At1g15720)
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    Genomic context

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    See TRFL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5406025..5407486)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Inorganic H pyrophosphatase family protein Neighboring gene ncRNA Neighboring gene ATPase, F1 complex, gamma subunit protein Neighboring gene prephenate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene Cobalamin biosynthesis CobW-like protein Neighboring gene ncRNA Neighboring gene Leucine-rich repeat family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101440.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRF-like 5
    NP_173024.1
    • TRF-like 5 (TRFL5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 513 Blast hits to 506 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 41; Plants - 402; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5406025..5407486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101440.3 → NP_173024.1  TRF-like 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173024.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6H7, Q9LMR2
      Conserved Domains (1) summary
      cd11660
      Location:339 → 387
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version

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