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    Rubisco methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819958, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rubisco methyltransferase family protein
    Primary source
    TAIR:AT3G07670
    Locus tag
    AT3G07670
    See related
    Araport:AT3G07670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (2451564..2455100)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CONSTANS-like 9 Neighboring gene flocculation protein (DUF1296) Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337727.1
    NM_111646.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-lysine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rubisco methyltransferase family protein
    NP_187424.1
    • Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT5G14260.2); Has 1290 Blast hits to 1288 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 357; Plants - 465; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2451564..2455100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111646.3 → NP_187424.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187424.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIC2, A0A384KCR9, A0A654F534, Q9S7D2
      Conserved Domains (2) summary
      cd19179
      Location:84 → 319
      SET_RBCMT; SET domain found in chloroplastic ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (RBCMT) and similar proteins
      pfam09273
      Location:343 → 471
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    2. NM_001337727.1 → NP_001325677.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLZ4
    Nucleotide Protein
    Heading Accession and Version

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