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    proline-rich receptor-like kinase, putative (DUF1421) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821110, updated on 18-Sep-2024

    Summary

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    Official Full Name
    proline-rich receptor-like kinase, putative (DUF1421)
    Primary source
    TAIR:AT3G01560
    Locus tag
    AT3G01560
    See related
    Araport:AT3G01560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4P13.11; F4P13_11
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (219582..221989)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DEAD box RNA helicase 1 Neighboring gene phosphoenolpyruvate (pep)/phosphate translocator 2 Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Dorone Y, et al. Cell, 2021 Aug 5. PMID 34233164, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337347.1
    NM_111022.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosperm protein body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline-rich receptor-like kinase, putative (DUF1421)
    NP_186805.2
    • CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein of unknown function DUF1421 (InterPro:IPR010820), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 90069 Blast hits to 50370 proteins in 2078 species: Archae - 118; Bacteria - 11979; Metazoa - 33430; Fungi - 17845; Plants - 12302; Viruses - 1904; Other Eukaryotes - 12491 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      219582..221989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111022.3 → NP_186805.2  proline-rich receptor-like kinase, putative (DUF1421) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186805.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J3J5, Q9SS99
      Conserved Domains (3) summary
      pfam07223
      Location:195 → 491
      DUF1421; Protein of unknown function (DUF1421)
      pfam10146
      Location:187 → 285
      zf-C4H2; Zinc finger-containing protein
      cl21463
      Location:458 → 496
      UBA_like_SF; UBA domain-like superfamily

    2. NM_001337347.1 → NP_001326869.1  proline-rich receptor-like kinase, putative (DUF1421) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQK8
    Nucleotide Protein
    Heading Accession and Version

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