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    RPSAb 40s ribosomal protein SA B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819637, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPSAb
    Official Full Name
    40s ribosomal protein SA B
    Primary source
    TAIR:AT3G04770
    Locus tag
    AT3G04770
    See related
    Araport:AT3G04770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    40s ribosomal protein SA B; F7O18.26; F7O18_26; P40 HOMOLOGUE
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    Genomic context

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    See RPSAb in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1309273..1311129, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene ncRNA Neighboring gene PITH domain protein (DUF1000) Neighboring gene Ribose 5-phosphate isomerase, type A protein Neighboring gene ncRNA Neighboring gene translocase inner membrane subunit 23-3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111349.4
    NM_180184.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 

    General protein information

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    Preferred Names
    40s ribosomal protein SA B
    NP_187128.1
    • 40s ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA (TAIR:AT1G72370.2); Has 3720 Blast hits to 3717 proteins in 1345 species: Archae - 262; Bacteria - 1764; Metazoa - 685; Fungi - 333; Plants - 227; Viruses - 0; Other Eukaryotes - 449 (source: NCBI BLink).
    NP_850515.1
    • 40s ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA (TAIR:AT1G72370.1); Has 3452 Blast hits to 3450 proteins in 1205 species: Archae - 263; Bacteria - 1638; Metazoa - 562; Fungi - 334; Plants - 225; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1309273..1311129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111349.4 → NP_187128.1  40s ribosomal protein SA B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187128.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H173, Q8LB49, Q8S9I1, Q96317
      UniProtKB/TrEMBL
      A0A178VCC8, A0A7G2EMG0
      Conserved Domains (1) summary
      PTZ00254
      Location:14 → 249
      PTZ00254; 40S ribosomal protein SA; Provisional

    2. NM_180184.2 → NP_850515.1  40s ribosomal protein SA B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X932, A0A654F5Q3, F4J4W3
      Conserved Domains (1) summary
      TIGR01012
      Location:15 → 204
      uS2_euk_arch; ribosomal protein uS2, eukaryotic/archaeal form
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H173.2

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