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    PITH domain protein (DUF1000) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819638, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PITH domain protein (DUF1000)
    Primary source
    TAIR:AT3G04780
    Locus tag
    AT3G04780
    See related
    Araport:AT3G04780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7O18.27; F7O18_27
    Summary
    Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (1310998..1313090, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene ncRNA Neighboring gene 40s ribosomal protein SA B Neighboring gene Ribose 5-phosphate isomerase, type A protein Neighboring gene ncRNA Neighboring gene translocase inner membrane subunit 23-3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111350.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    PITH domain protein (DUF1000)
    NP_566238.1
    • CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT2G25950.1); Has 606 Blast hits to 606 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1310998..1313090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111350.3 → NP_566238.1  PITH domain protein (DUF1000) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566238.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z56, Q9CAU6, Q9SQZ9
      UniProtKB/TrEMBL
      A0A178VLI5, A0A5S9X970
      Conserved Domains (1) summary
      pfam06201
      Location:18 → 160
      PITH; PITH domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQZ9.2

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