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    ASD1 alpha-L-arabinofuranosidase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820243, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASD1
    Official Full Name
    alpha-L-arabinofuranosidase 1
    Primary source
    TAIR:AT3G10740
    Locus tag
    AT3G10740
    See related
    Araport:AT3G10740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ALPHA-L-ARABINOFURANOSIDASE; alpha-L-arabinofuranosidase 1; ALPHA-L-ARABINOFURANOSIDASE 1; ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1; ARAF; ARAF1; ATASD1
    Summary
    Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.
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    Genomic context

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    See ASD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Sequence:
    Chromosome: 3; NC_003074.8 (3360711..3365739, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene SAD1/UNC-84 domain protein 2 Neighboring gene ncRNA Neighboring gene FBD domain family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity. Chávez Montes RA, et al. Plant Physiol, 2008 May. PMID 18344421, Free PMC Article
    2. Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis. Minic Z, et al. Plant Physiol, 2004 Jun. PMID 15181203, Free PMC Article
    3. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabinan-containing pectins are potential in vivo substrates.
      Title: Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001337892.1
    NM_001337893.1
    NM_001337894.1
    NM_111911.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-L-arabinofuranosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xylan 1,4-beta-xylosidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-arabinose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within xylan catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    alpha-L-arabinofuranosidase 1
    NP_187685.1
    • alpha-L-arabinofuranosidase 1 (ASD1); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase, C-terminal (InterPro:IPR010720), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: alpha-L-arabinofuranosidase 2 (TAIR:AT5G26120.1); Has 1627 Blast hits to 1611 proteins in 407 species: Archae - 8; Bacteria - 1238; Metazoa - 0; Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3360711..3365739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111911.5 → NP_187685.1  alpha-L-arabinofuranosidase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187685.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W72, Q570E2, Q84RC5, Q94JT7, Q9SG80
      UniProtKB/TrEMBL
      A0A178VHD8, A0A654F5Z6
      Conserved Domains (1) summary
      smart00813
      Location:464 → 649
      Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus

    2. NM_001337892.1 → NP_001326565.1  alpha-L-arabinofuranosidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPN8, A0A5S9XB62

    3. NM_001337893.1 → NP_001326566.1  alpha-L-arabinofuranosidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W72, Q570E2, Q84RC5, Q94JT7, Q9SG80
      UniProtKB/TrEMBL
      A0A178VHD8, A0A654F5Z6
      Conserved Domains (1) summary
      smart00813
      Location:464 → 649
      Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus

    4. NM_001337894.1 → NP_001326567.1  alpha-L-arabinofuranosidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPN8, A0A5S9XB62
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SG80.1

    Gene LinkOut

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