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    Rubredoxin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820806, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rubredoxin-like superfamily protein
    Primary source
    TAIR:AT3G15640
    Locus tag
    AT3G15640
    See related
    Araport:AT3G15640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (5298991..5301745)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA photolyase family protein Neighboring gene plant/protein Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene glutaredoxin 4 Neighboring gene Late embryogenesis abundant protein (LEA) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction. K MJ, et al. PLoS One, 2014. PMID 24901469, Free PMC Article
    2. Proteomic identification of divalent metal cation binding proteins in plant mitochondria. Herald VL, et al. FEBS Lett, 2003 Feb 27. PMID 12606038
    3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    4. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084692.1
    NM_112434.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cobalt ion binding HDA PubMed 
    enables metal ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    part_of respiratory chain complex IV IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Rubredoxin-like superfamily protein
    NP_001078161.1
    • Rubredoxin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT1G80230.1); Has 464 Blast hits to 464 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 86; Plants - 102; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    NP_188185.1
    • Rubredoxin-like superfamily protein; FUNCTIONS IN: cytochrome-c oxidase activity, cobalt ion binding, zinc ion binding, metal ion binding; LOCATED IN: mitochondrial envelope, mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT1G80230.1); Has 469 Blast hits to 469 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 236; Fungi - 89; Plants - 104; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5298991..5301745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112434.3 → NP_188185.1  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188185.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LW15
      UniProtKB/TrEMBL
      A0A178VCD0, A0A5S9XDY0
      Conserved Domains (1) summary
      PLN02294
      Location:1 → 176
      PLN02294; cytochrome c oxidase subunit Vb

    2. NM_001084692.1 → NP_001078161.1  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078161.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRD7
      Conserved Domains (1) summary
      PLN02294
      Location:1 → 175
      PLN02294; cytochrome c oxidase subunit Vb
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LW15.1

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