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    Zinc finger (CCCH-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821470, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc finger (CCCH-type) family protein
    Primary source
    TAIR:AT3G19360
    Locus tag
    AT3G19360
    See related
    Araport:AT3G19360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (6707133..6709191)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene aminopeptidase (DUF3754) Neighboring gene maternally expressed pab C-terminal Neighboring gene filament-like protein (DUF869) Neighboring gene plant U-box 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338393.1
    NM_112823.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Zinc finger (CCCH-type) family protein
    NP_566631.1
    • Zinc finger (CCCH-type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 1128 Blast hits to 788 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 86; Plants - 385; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6707133..6709191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112823.4 → NP_566631.1  Zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566631.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT81
      UniProtKB/TrEMBL
      A0A5S9XDM4, A0A654FAK4
      Conserved Domains (2) summary
      COG5063
      Location:198 → 300
      CTH1; CCCH-type Zn-finger protein [General function prediction only]
      pfam00642
      Location:270 → 296
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    2. NM_001338393.1 → NP_001327691.1  Zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT81
      UniProtKB/TrEMBL
      A0A5S9XDM4, A0A654FAK4
      Conserved Domains (2) summary
      COG5063
      Location:198 → 300
      CTH1; CCCH-type Zn-finger protein [General function prediction only]
      pfam00642
      Location:270 → 296
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT81.1

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