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    PLC-like phosphodiesterases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821465, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLC-like phosphodiesterases superfamily protein
    Primary source
    TAIR:AT3G19310
    Locus tag
    AT3G19310
    See related
    Araport:AT3G19310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (6694114..6696357)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ABRE binding factor 4 Neighboring gene Protein kinase superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene miscRNA Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene aminopeptidase (DUF3754)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112818.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLC-like phosphodiesterases superfamily protein
    NP_188562.1
    • PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific, X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 454 Blast hits to 451 proteins in 104 species: Archae - 0; Bacteria - 82; Metazoa - 4; Fungi - 158; Plants - 154; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6694114..6696357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112818.4 → NP_188562.1  PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188562.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VE04, A0A384KVQ5, A0A5S9XDL3, A0A654F9P1, Q9LT86
      Conserved Domains (1) summary
      cd08588
      Location:65 → 339
      PI-PLCc_At5g67130_like; Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs
    Nucleotide Protein
    Heading Accession and Version

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