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    FaTA fatA acyl-ACP thioesterase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822102, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FaTA
    Official Full Name
    fatA acyl-ACP thioesterase
    Primary source
    TAIR:AT3G25110
    Locus tag
    AT3G25110
    See related
    Araport:AT3G25110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFaTA; fatA acyl-ACP thioesterase
    Summary
    Encodes a FatA acyl-ACP thioesterase
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    Genomic context

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    See FaTA in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (9146271..9148525, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene cell division cycle 45 Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family B protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds. Moreno-Pérez AJ, et al. Planta, 2012 Mar. PMID 22002626
    2. Characterization of substrate specificity of plant FatA and FatB acyl-ACP thioesterases. Salas JJ, et al. Arch Biochem Biophys, 2002 Jul 1. PMID 12061798
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds.
      Title: Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_113415.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acyl-[ACP] hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    fatA acyl-ACP thioesterase
    NP_189147.1
    • fatA acyl-ACP thioesterase (FaTA); CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: Acyl-ACP thioesterase (TAIR:AT4G13050.1); Has 1414 Blast hits to 1414 proteins in 571 species: Archae - 0; Bacteria - 1089; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9146271..9148525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113415.4 → NP_189147.1  fatA acyl-ACP thioesterase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189147.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42561
      UniProtKB/TrEMBL
      A0A178VJP1, A0A5S9XFE4
      Conserved Domains (3) summary
      cd00586
      Location:84 → 200
      4HBT; 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. ...
      pfam01643
      Location:81 → 358
      Acyl-ACP_TE; Acyl-ACP thioesterase
      cl00509
      Location:254 → 320
      hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42561.1

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