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    RNA-directed DNA polymerase (reverse transcriptase)-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822161, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    Primary source
    TAIR:AT3G25720
    Locus tag
    AT3G25720
    See related
    Araport:AT3G25720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9380234..9381405)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene non-LTR retrolelement reverse transcriptase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113471.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA-directed DNA polymerase (reverse transcriptase)-related family protein
    NP_189200.1
    • RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G10613.1); Has 517 Blast hits to 476 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9380234..9381405
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113471.1 → NP_189200.1  RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189200.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3EB05
      Conserved Domains (1) summary
      pfam13966
      Location:153 → 186
      zf-RVT; zinc-binding in reverse transcriptase
    Nucleotide Protein
    Heading Accession and Version

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