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    DMP1 transmembrane protein, putative (DUF679 domain membrane protein 1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821706, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DMP1
    Official Full Name
    transmembrane protein, putative (DUF679 domain membrane protein 1)
    Primary source
    TAIR:AT3G21520
    Locus tag
    AT3G21520
    See related
    Araport:AT3G21520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana DUF679 domain membrane protein 1; AtDMP1; DUF679 domain membrane protein 1
    Summary
    Encodes a protein is directly or indirectly involved in membrane fission during breakdown of the ER and the tonoplast during leaf senescence and in membrane fusion during vacuole biogenesis in roots.
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    Genomic context

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    See DMP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (7581959..7582793)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene 1-deoxy-D-xylulose 5-phosphate synthase 1 Neighboring gene histidine-containing phosphotransmitter 1 Neighboring gene ncRNA Neighboring gene DNAse I-like superfamily protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene transmembrane protein, putative (DUF679 domain membrane protein 2)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis senescence-associated protein DMP1 is involved in membrane remodeling of the ER and tonoplast. Kasaras A, et al. BMC Plant Biol, 2012 Apr 24. PMID 22530652, Free PMC Article
    2. Expression, localisation and phylogeny of a novel family of plant-specific membrane proteins. Kasaras A, et al. Plant Biol (Stuttg), 2010 Sep. PMID 20712629
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113047.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endomembrane system organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in endoplasmic reticulum membrane organization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in membrane fission IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in membrane fusion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in plant organ senescence IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF679 domain membrane protein 1)
    NP_188789.2
    • DUF679 domain membrane protein 1 (DMP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: DUF679 domain membrane protein 2 (TAIR:AT3G21550.1); Has 263 Blast hits to 255 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7581959..7582793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113047.3 → NP_188789.2  transmembrane protein, putative (DUF679 domain membrane protein 1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188789.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVF4
      UniProtKB/TrEMBL
      A0A178VK65, A0A5S9XEV4, A0A654F9D7
      Conserved Domains (1) summary
      pfam05078
      Location:28 → 187
      DUF679; Protein of unknown function (DUF679)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVF4.1

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