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    Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842820, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin carboxyl-terminal hydrolase-related protein
    Primary source
    TAIR:AT1G65130
    Locus tag
    AT1G65130
    See related
    Araport:AT1G65130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K8.4; T23K8_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (24196345..24201346, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SCR-like 2 Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene TRAF-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin carboxyl-terminal hydrolase-related protein
    NP_176692.3
    • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65200.1); Has 327 Blast hits to 290 proteins in 68 species: Archae - 0; Bacteria - 15; Metazoa - 27; Fungi - 22; Plants - 225; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24196345..24201346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105186.4 → NP_176692.3  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176692.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WSD2, A0A654EL54, F4I9U9
      Conserved Domains (4) summary
      cd02257
      Location:856 → 1076
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:781 → 1075
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam04780
      Location:174 → 638
      DUF629; Protein of unknown function (DUF629)
      pfam04781
      Location:11 → 119
      DUF627; Protein of unknown function (DUF627)

    2. NM_001334193.1 → NP_001321547.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR77, A0A5S9WSD2

    3. NM_001334194.1 → NP_001321550.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR91, A0A5S9WSD2

    4. NM_001334195.1 → NP_001321549.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR91, A0A5S9WSD2

    5. NM_001334196.1 → NP_001321548.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARC2, A0A5S9WSD2, A0A654EL54
    Nucleotide Protein
    Heading Accession and Version

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