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    ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822025, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Primary source
    TAIR:AT3G24360
    Locus tag
    AT3G24360
    See related
    Araport:AT3G24360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (8839670..8842929, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chromatin remodeling 40 Neighboring gene ncRNA Neighboring gene syntaxin of plants 32 Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084736.2
    NM_001338679.1
    NM_001338680.1
    NM_001338681.1
    NM_113343.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    NP_001078205.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G13360.1); Has 22029 Blast hits to 22019 proteins in 1814 species: Archae - 358; Bacteria - 15169; Metazoa - 927; Fungi - 600; Plants - 484; Viruses - 0; Other Eukaryotes - 4491 (source: NCBI BLink).
    NP_189079.2
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G13360.1); Has 20885 Blast hits to 20875 proteins in 1799 species: Archae - 367; Bacteria - 14429; Metazoa - 898; Fungi - 583; Plants - 486; Viruses - 0; Other Eukaryotes - 4122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8839670..8842929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338678.1 → NP_001326802.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQD9

    2. NM_001084736.2 → NP_001078205.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078205.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4X6, A0A178V5W5
      Conserved Domains (2) summary
      PRK05617
      Location:54 → 404
      PRK05617; 3-hydroxyisobutyryl-CoA hydrolase; Provisional
      pfam16113
      Location:57 → 401
      ECH_2; Enoyl-CoA hydratase/isomerase

    3. NM_001338679.1 → NP_001326803.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQE0

    4. NM_113343.3 → NP_189079.2  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189079.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MS00, Q9LK08
      UniProtKB/TrEMBL
      A0A178V4X6, A0A5S9XFD3
      Conserved Domains (1) summary
      pfam16113
      Location:57 → 405
      ECH_2; Enoyl-CoA hydratase/isomerase

    5. NM_001338680.1 → NP_001326804.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQE1, A0A7G2ESD6

    6. NM_001338681.1 → NP_001326805.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQE2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK08.1

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