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    COBL10 COBRA-like protein 10 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821605, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COBL10
    Official Full Name
    COBRA-like protein 10 precursor
    Primary source
    TAIR:AT3G20580
    Locus tag
    AT3G20580
    See related
    Araport:AT3G20580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COBRA-like protein 10 precursor
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    Genomic context

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    See COBL10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7187699..7190648, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene PDI-like 5-3 Neighboring gene early nodulin-like protein 9 Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the Arabidopsis pollen transcriptome. Honys D, et al. Plant Physiol, 2003 Jun. PMID 12805594, Free PMC Article
    2. ABNORMAL POLLEN TUBE GUIDANCE1, an Endoplasmic Reticulum-Localized Mannosyltransferase Homolog of GLYCOSYLPHOSPHATIDYLINOSITOL10 in Yeast and PHOSPHATIDYLINOSITOL GLYCAN ANCHOR BIOSYNTHESIS B in Human, Is Required for Arabidopsis Pollen Tube Micropylar Guidance and Embryo Development. Dai XR, et al. Plant Physiol, 2014 Aug. PMID 24963069, Free PMC Article
    3. Arabidopsis COBRA-LIKE 10, a GPI-anchored protein, mediates directional growth of pollen tubes. Li S, et al. Plant J, 2013 May. PMID 23384085
    4. Two Membrane-Anchored Aspartic Proteases Contribute to Pollen and Ovule Development. Gao H, et al. Plant Physiol, 2017 Jan. PMID 27872247, Free PMC Article
    5. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COBL10 loss of function caused gametophytic male sterility.
      Title: Arabidopsis COBRA-LIKE 10, a GPI-anchored protein, mediates directional growth of pollen tubes.
    Submit: New GeneRIF Correction

    General gene information

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    NM_112950.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cellulose microfibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT involved_in pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COBRA-like protein 10 precursor
    NP_188694.2
    • COBRA-like protein 10 precursor (COBL10); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 11 precursor (TAIR:AT4G27110.1); Has 377 Blast hits to 368 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 377; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7187699..7190648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112950.3 → NP_188694.2  COBRA-like protein 10 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188694.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LJU0
      UniProtKB/TrEMBL
      A0A5S9XE02, A0A654FA06
      Conserved Domains (1) summary
      pfam04833
      Location:245 → 424
      COBRA; COBRA-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJU0.1

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