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    QQS qua-quine starch [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822807, updated on 18-Sep-2024

    Summary

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    Official Symbol
    QQS
    Official Full Name
    qua-quine starch
    Primary source
    TAIR:AT3G30720
    Locus tag
    AT3G30720
    See related
    Araport:AT3G30720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    QUA-QUINE STARCH
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    Genomic context

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    See QQS in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (12349047..12349933)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene glutamine dumper 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean. Li L, et al. Plant Biotechnol J, 2015 Feb. PMID 25146936, Free PMC Article
    2. Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Li L, et al. Plant J, 2009 May. PMID 19154206
    3. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Qi M, et al. Plant Biotechnol J, 2019 Jan. PMID 29878511, Free PMC Article
    4. QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions. Li L, et al. Proc Natl Acad Sci U S A, 2015 Nov 24. PMID 26554020, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. expression with its interactor NF-YC4 reduces susceptibility to pathogens and pests
      Title: QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    2. QQS protein binds to the transcriptional regulator AtNF-YC4 (Arabidopsis nuclear factor Y, subunit C4).
      Title: QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
    3. altering QQS expression in Arabidopsis affects carbon partitioning to both starch and protein.
      Title: The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.
    4. QQS is involved in regulation of starch metabolism.
      Title: Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001339055.1
    NM_113975.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of starch metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of protein metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within starch biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    qua-quine starch
    NP_189695.1
    • QUA-QUINE STARCH (QQS); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      12349047..12349933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339054.1 → NP_001326493.1  qua-quine starch [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPF7, A0A5S9XH55

    2. NM_113975.5 → NP_189695.1  qua-quine starch [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189695.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E7K4

    3. NM_001339055.1 → NP_001326492.1  qua-quine starch [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPF7, A0A5S9XH55
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E7K4.1

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