U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FLA15 FASCICLIN-like arabinogalactan protein 15 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824402, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FLA15
    Official Full Name
    FASCICLIN-like arabinogalactan protein 15 precursor
    Primary source
    TAIR:AT3G52370
    Locus tag
    AT3G52370
    See related
    Araport:AT3G52370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FASCICLIN-like arabinogalactan protein 15 precursor
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FLA15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (19417372..19419913)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D111/G-patch domain-containing protein Neighboring gene uncharacterized protein Neighboring gene chloroplast RNA-binding protein 33 Neighboring gene TatD related DNase Neighboring gene syntaxin of plants 122

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_115097.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    FASCICLIN-like arabinogalactan protein 15 precursor
    NP_190805.1
    • FASCICLIN-like arabinogalactan protein 15 precursor (FLA15); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 16 precursor (TAIR:AT2G35860.1); Has 1194 Blast hits to 1139 proteins in 270 species: Archae - 8; Bacteria - 524; Metazoa - 184; Fungi - 15; Plants - 237; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19417372..19419913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339573.1 → NP_001325578.1  FASCICLIN-like arabinogalactan protein 15 precursor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAW5, A0A1I9LLN6

    2. NM_115097.3 → NP_190805.1  FASCICLIN-like arabinogalactan protein 15 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190805.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FT45
      UniProtKB/TrEMBL
      A0A178VAW5, A0A5S9XK37, A0A654FF47
      Conserved Domains (3) summary
      smart00554
      Location:290 → 395
      FAS1; Four repeated domains in the Fasciclin I family of proteins, present in many other contexts
      pfam02469
      Location:42 → 167
      Fasciclin; Fasciclin domain
      cl02663
      Location:244 → 323
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT45.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools