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    vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838253, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
    Primary source
    TAIR:AT1G16820
    Locus tag
    AT1G16820
    See related
    Araport:AT1G16820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F16.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (5756835..5758653, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Inorganic H pyrophosphatase family protein Neighboring gene ribosomal protein-like protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene 7-dehydrocholesterol reductase-like protein Neighboring gene ncRNA Neighboring gene Reticulon family protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana. Liang G, et al. Int J Mol Sci, 2020 Dec 22. PMID 33374906, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana.
      Title: Ammonium Accumulation Caused by Reduced Tonoplast V-ATPase Activity in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198087.2
    NM_001332265.1
    NM_001332266.1
    NM_101543.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein
    NP_001185016.1
    • vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2).
    NP_173126.1
    • vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit A (TAIR:AT1G78900.2); Has 151 Blast hits to 150 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5756835..5758653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101543.4 → NP_173126.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I600
      Conserved Domains (1) summary
      TIGR01042
      Location:32 → 68
      V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

    2. NM_001332265.1 → NP_001322038.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DTR5, Q84TI5
      Conserved Domains (1) summary
      TIGR01042
      Location:1 → 23
      V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

    3. NM_001198087.2 → NP_001185016.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185016.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DTR6, F4I601
      Conserved Domains (1) summary
      TIGR01042
      Location:4 → 41
      V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit

    4. NM_001332266.1 → NP_001322037.1  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DTR5, Q84TI5
      Conserved Domains (1) summary
      TIGR01042
      Location:1 → 23
      V-ATPase_V1_A; V-type (H+)-ATPase V1, A subunit
    Nucleotide Protein
    Heading Accession and Version

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