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    AGY1 Albino or Glassy Yellow 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827922, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGY1
    Official Full Name
    Albino or Glassy Yellow 1
    Primary source
    TAIR:AT4G01800
    Locus tag
    AT4G01800
    See related
    Araport:AT4G01800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Albino or Glassy Yellow 1; Arabidopsis thaliana chloroplast SecA; AtcpSecA; SECA1; T7B11.6; T7B11_6
    Summary
    Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.
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    Genomic context

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    See AGY1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Sequence:
    Chromosome: 4; NC_003075.7 (770722..776439, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene rhamnogalacturonan xylosyltransferase 1 Neighboring gene XH/XS domain-containing protein Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene P-glycoprotein 3 Neighboring gene P-glycoprotein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. cpSecA, a thylakoid protein translocase subunit, is essential for photosynthetic development in Arabidopsis. Liu D, et al. J Exp Bot, 2010 Jun. PMID 20194926
    2. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
    3. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203724.1
    NM_001340335.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chloroplast protein-transporting ATPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein import IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein targeting IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within trichome morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 

    General protein information

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    Preferred Names
    Albino or Glassy Yellow 1
    NP_001190653.1
    • Albino or Glassy Yellow 1 (AGY1); FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA, preprotein translocase (InterPro:IPR022491), SecA motor DEAD (InterPro:IPR014018), SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.1).
    NP_192089.1
    • Albino or Glassy Yellow 1 (AGY1); FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing/Scaffold (InterPro:IPR011116), SecA, preprotein translocase (InterPro:IPR022491), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.1); Has 20907 Blast hits to 13323 proteins in 2793 species: Archae - 2; Bacteria - 12417; Metazoa - 53; Fungi - 1; Plants - 99; Viruses - 0; Other Eukaryotes - 8335 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      770722..776439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116410.2 → NP_192089.1  Albino or Glassy Yellow 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192089.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYI0
      UniProtKB/TrEMBL
      A0A7G2EWN1
      Conserved Domains (5) summary
      PRK12902
      Location:93 → 980
      secA; preprotein translocase subunit SecA; Reviewed
      cd00046
      Location:173 → 289
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01043
      Location:307 → 413
      SecA_PP_bind; SecA preprotein cross-linking domain
      pfam07516
      Location:763 → 979
      SecA_SW; SecA Wing and Scaffold domain
      cl21455
      Location:487 → 570
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001203724.1 → NP_001190653.1  Albino or Glassy Yellow 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190653.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FL37, F4JG57
      Conserved Domains (5) summary
      PRK12902
      Location:94 → 1000
      secA; preprotein translocase subunit SecA; Reviewed
      cd00046
      Location:174 → 273
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01043
      Location:291 → 397
      SecA_PP_bind; SecA preprotein cross-linking domain
      pfam07516
      Location:783 → 999
      SecA_SW; SecA Wing and Scaffold domain
      cl21455
      Location:507 → 590
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. NM_001340335.1 → NP_001328302.1  Albino or Glassy Yellow 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B485, A0A654FL37
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYI0.2

    Gene LinkOut

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