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    AGD13 ARF-GAP domain 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825881, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGD13
    Official Full Name
    ARF-GAP domain 13
    Primary source
    TAIR:AT4G05330
    Locus tag
    AT4G05330
    See related
    Araport:AT4G05330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARF-GAP domain 13; C6L9.10; C6L9_10
    Summary
    A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
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    Genomic context

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    See AGD13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (2720493..2723214, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like superfamily protein Neighboring gene polyubiquitin 10 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Reňák D, et al. Sex Plant Reprod, 2012 Mar. PMID 22101548
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340549.1
    NM_116772.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARF-GAP domain 13
    NP_567292.1
    • ARF-GAP domain 13 (AGD13); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent ARF-type GTPase activating protein family (TAIR:AT4G21160.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2720493..2723214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340548.1 → NP_001328043.1  ARF-GAP domain 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3F7, A0A5S9XQH6

    2. NM_116772.4 → NP_567292.1  ARF-GAP domain 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567292.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFN9, Q9M0W2
      UniProtKB/TrEMBL
      A0A178V602, A0A5S9XQH6
      Conserved Domains (2) summary
      cd04038
      Location:179 → 323
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
      cd08204
      Location:18 → 124
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)

    3. NM_001340549.1 → NP_001328044.1  ARF-GAP domain 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFN9, Q9M0W2
      UniProtKB/TrEMBL
      A0A178V602, A0A5S9XQH6
      Conserved Domains (2) summary
      cd04038
      Location:179 → 323
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
      cd08204
      Location:18 → 124
      ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFN9.1

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