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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827711, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT4G19670
    Locus tag
    AT4G19670
    See related
    Araport:AT4G19670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16H5.30; T16H5_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (10699189..10702174, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene NPR1-like protein 4 Neighboring gene iron regulated transporter 2 Neighboring gene iron-regulated transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084940.2
    NM_001341368.1
    NM_001341369.1
    NM_001341370.1
    NM_001341371.1
    NM_118087.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_001078409.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
    NP_193702.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10699189..10702174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341367.1 → NP_001329049.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77

    2. NM_001084940.2 → NP_001078409.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078409.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77
      Conserved Domains (3) summary
      smart00647
      Location:273 → 348
      IBR; In Between Ring fingers
      pfam01485
      Location:358 → 413
      IBR; IBR domain, a half RING-finger domain
      cl14782
      Location:76 → 173
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8

    3. NM_001341371.1 → NP_001329048.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77

    4. NM_001341370.1 → NP_001329047.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77

    5. NM_001341369.1 → NP_001329046.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77

    6. NM_001341368.1 → NP_001329045.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77

    7. NM_118087.4 → NP_193702.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193702.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWR0, A0A5S9XW20, O81849, Q0WQ77
      Conserved Domains (3) summary
      smart00647
      Location:273 → 348
      IBR; In Between Ring fingers
      pfam01485
      Location:358 → 413
      IBR; IBR domain, a half RING-finger domain
      cl14782
      Location:76 → 173
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    Nucleotide Protein
    Heading Accession and Version

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