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    RABE1b RAB GTPase homolog E1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827784, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABE1b
    Official Full Name
    RAB GTPase homolog E1B
    Primary source
    TAIR:AT4G20360
    Locus tag
    AT4G20360
    See related
    Araport:AT4G20360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRAB8D; ATRABE1B; F9F13.10; F9F13_10; RAB GTPase homolog E1B
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    Genomic context

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    See RABE1b in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (10989910..10992509)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chloroplast Translation Elongation Factor EF-Tu/SVR11 Is Involved in var2-Mediated Leaf Variegation and Leaf Development in Arabidopsis. Liu S, et al. Front Plant Sci, 2019. PMID 30915096, Free PMC Article
    2. Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process. Huang FC, et al. Plant Cell Physiol, 2021 Dec 3. PMID 34255832
    3. Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase. Camacho L, et al. J Cell Sci, 2009 Dec 1. PMID 19903693
    4. Four closely-related RING-type E3 ligases, APD1-4, are involved in pollen mitosis II regulation in Arabidopsis. Luo G, et al. J Integr Plant Biol, 2012 Oct. PMID 22897245
    5. The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. König AC, et al. Plant Physiol, 2014 Mar. PMID 24424322, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process.
      Title: Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118155.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast nucleoid HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleolus HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog E1B
    NP_193769.1
    • RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10989910..10992509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341435.1 → NP_001329775.1  RAB GTPase homolog E1B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P17745, Q8GTE7
      UniProtKB/TrEMBL
      A0A178UY83, A0A5S9XUK5, A0A7G2EZ99
      Conserved Domains (1) summary
      PLN03126
      Location:17 → 476
      PLN03126; Elongation factor Tu; Provisional

    2. NM_118155.2 → NP_193769.1  RAB GTPase homolog E1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193769.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P17745, Q8GTE7
      UniProtKB/TrEMBL
      A0A178UY83, A0A5S9XUK5, A0A7G2EZ99
      Conserved Domains (1) summary
      PLN03126
      Location:17 → 476
      PLN03126; Elongation factor Tu; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P17745.1

    Gene LinkOut

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