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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828323, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT4G22280
    Locus tag
    AT4G22280
    See related
    Araport:AT4G22280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10I14.110; T10I14_110
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (11775969..11778151, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Alternative oxidase family protein Neighboring gene transmembrane protein, putative (DUF3537) Neighboring gene tRNA-Tyr Neighboring gene ncRNA Neighboring gene Ubiquitin C-terminal hydrolases superfamily protein Neighboring gene Ubiquitin-specific protease family C19-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118354.4
    NM_202861.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_193959.2
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58920.1); Has 1904 Blast hits to 1860 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1904; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974590.1
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11775969..11778151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118354.4 → NP_193959.2  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193959.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FRS9, A8MS33
      Conserved Domains (3) summary
      smart00579
      Location:342 → 413
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:127 → 148
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:148 → 175
      LRR_2; Leucine Rich Repeat

    2. NM_202861.1 → NP_974590.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974590.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49633, Q3E7K7
      Conserved Domains (2) summary
      sd00032
      Location:127 → 148
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:148 → 175
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E7K7.1

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