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    RRP41L 3'-5'-exoribonuclease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828858, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RRP41L
    Official Full Name
    3'-5'-exoribonuclease family protein
    Primary source
    TAIR:AT4G27490
    Locus tag
    AT4G27490
    See related
    Araport:AT4G27490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27G19.90; F27G19_90; RRP41 like
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    Genomic context

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    See RRP41L in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (13739748..13741898)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING membrane-anchor 3 Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene proton pump interactor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RRP41L, a putative core subunit of the exosome, plays an important role in seed germination and early seedling growth in Arabidopsis. Yang M, et al. Plant Physiol, 2013 Jan. PMID 23132787, Free PMC Article
    2. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RRP41L plays an important role in seed germination and early seedling growth by mediating specific cytoplasmic mRNA decay in Arabidopsis. [RRP41L]
      Title: RRP41L, a putative core subunit of the exosome, plays an important role in seed germination and early seedling growth in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341852.1
    NM_001341853.1
    NM_001341854.1
    NM_001341855.1
    NM_001341856.1
    NM_001341857.1
    NM_001341858.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3'-5'-exoribonuclease family protein
    NP_001320075.1
    • 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT3G61620.2); Has 6020 Blast hits to 6020 proteins in 1904 species: Archae - 333; Bacteria - 3622; Metazoa - 423; Fungi - 273; Plants - 197; Viruses - 0; Other Eukaryotes - 1172 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13739748..13741898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341852.1 → NP_001320075.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVK7, Q8GWJ0, Q9SZS4
      UniProtKB/TrEMBL
      A0A178UYE3, A0A5S9XWD2
      Conserved Domains (1) summary
      cd11371
      Location:43 → 249
      RNase_PH_MTR3; MTR3 subunit of eukaryotic exosome

    2. NM_001341854.1 → NP_001328238.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVK7, Q8GWJ0, Q9SZS4
      UniProtKB/TrEMBL
      A0A178UYE3, A0A5S9XWD2
      Conserved Domains (1) summary
      cd11371
      Location:43 → 249
      RNase_PH_MTR3; MTR3 subunit of eukaryotic exosome

    3. NM_001341853.1 → NP_001328239.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3Z7

    4. NM_001341855.1 → NP_001328241.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A2RVK7, Q8GWJ0, Q9SZS4
      UniProtKB/TrEMBL
      A0A178UYE3, A0A5S9XWD2
      Conserved Domains (1) summary
      cd11371
      Location:43 → 249
      RNase_PH_MTR3; MTR3 subunit of eukaryotic exosome

    5. NM_001341856.1 → NP_001328240.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3Z7

    6. NM_001341857.1 → NP_001328243.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3Z7

    7. NM_001341858.1 → NP_001328242.1  3'-5'-exoribonuclease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B403
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2RVK7.1

    Gene LinkOut

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