U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RMA2 RING membrane-anchor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828942, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RMA2
    Official Full Name
    RING membrane-anchor 2
    Primary source
    TAIR:AT4G28270
    Locus tag
    AT4G28270
    See related
    Araport:AT4G28270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRMA2; F26K10.150; F26K10_150; RING membrane-anchor 2
    Summary
    Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RMA2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (14007475..14009287, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene expansin B3 Neighboring gene acyl-UDP-N-acetylglucosamine O-acyltransferase Neighboring gene uncharacterized protein Neighboring gene LORELEI-LIKE-GPI ANCHORED PROTEIN 3 Neighboring gene formin-like protein (DUF1421)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1. Son O, et al. Biochem Biophys Res Commun, 2010 Mar 12. PMID 20152813
    2. Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase. Son O, et al. Plant Cell Rep, 2009 Apr. PMID 19224217
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RMA1, RMA2 and RMA3 all have E3 ubiquitin ligase activity and are localized to the endoplasmic reticulum. [RMA2]
      Title: Characterization of three Arabidopsis homologs of human RING membrane anchor E3 ubiquitin ligase.
    2. AtRma2 is likely involved in the cellular regulation of ABP1 expression levels. [AtRma2]
      Title: In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_118967.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING membrane-anchor 2
    NP_194556.1
    • RING membrane-anchor 2 (RMA2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2577 Blast hits to 2577 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 1370; Fungi - 347; Plants - 593; Viruses - 12; Other Eukaryotes - 255 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14007475..14009287 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118967.3 → NP_194556.1  RING membrane-anchor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194556.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93030
      UniProtKB/TrEMBL
      A0A178UX84, A0A5S9XWN8, A0A654FTP1
      Conserved Domains (1) summary
      PLN03208
      Location:1 → 193
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93030.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools