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    PPR superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829234, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPR superfamily protein
    Primary source
    TAIR:AT4G31070
    Locus tag
    AT4G31070
    See related
    Araport:AT4G31070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6I18.20; F6I18_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (15117756..15120608, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Biotin/lipoate A/B protein ligase family Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Arg Neighboring gene integral membrane metal-binding family protein (DUF2296)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPR superfamily protein
    NP_001320098.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38861 Blast hits to 13091 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 61; Plants - 38225; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15117756..15120608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342052.1 → NP_001320098.1  PPR superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JR67, O65543
      UniProtKB/TrEMBL
      A0A5S9XXU1, A0A654FUF2
      Conserved Domains (2) summary
      PLN03077
      Location:36 → 608
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:331 → 358
      PPR; PPR repeat [structural motif]

    2. NM_001342053.1 → NP_001328866.1  PPR superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JR67, O65543
      UniProtKB/TrEMBL
      A0A5S9XXU1, A0A654FUF2
      Conserved Domains (2) summary
      PLN03077
      Location:36 → 608
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:331 → 358
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65543.2

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