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    RecQl3 DEAD/DEAH box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829727, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RecQl3
    Official Full Name
    DEAD/DEAH box RNA helicase family protein
    Primary source
    TAIR:AT4G35740
    Locus tag
    AT4G35740
    See related
    Araport:AT4G35740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. THALIANA RECQ HELICASE 3; ATRECQ3; F8D20.250; F8D20_250
    Summary
    Encodes RECQ3, an ATP-dependent helicase.
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    Genomic context

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    See RecQl3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Sequence:
    Chromosome: 4; NC_003075.7 (16935988..16940372)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Neighboring gene NAD(P)H dehydrogenase (quinone)s Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fork sensing and strand switching control antagonistic activities of RecQ helicases. Klaue D, et al. Nat Commun, 2013. PMID 23771268, Free PMC Article
    2. Biochemical characterization of AtRECQ3 reveals significant differences relative to other RecQ helicases. Kobbe D, et al. Plant Physiol, 2009 Nov. PMID 19755539, Free PMC Article
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119740.3
    NM_179169.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables four-way junction helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA duplex unwinding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEAD/DEAH box RNA helicase family protein
    NP_195299.2
    • RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 32322 Blast hits to 32243 proteins in 2865 species: Archae - 544; Bacteria - 19123; Metazoa - 3830; Fungi - 3081; Plants - 1743; Viruses - 10; Other Eukaryotes - 3991 (source: NCBI BLink).
    NP_849500.1
    • RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 28158 Blast hits to 28089 proteins in 2765 species: Archae - 286; Bacteria - 16813; Metazoa - 3341; Fungi - 2669; Plants - 1491; Viruses - 10; Other Eukaryotes - 3548 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16935988..16940372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119740.3 → NP_195299.2  DEAD/DEAH box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195299.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPC1, Q3E9Q7, Q9FT72
      UniProtKB/TrEMBL
      A0A5S9XZM7
      Conserved Domains (4) summary
      smart00487
      Location:32 → 235
      DEXDc; DEAD-like helicases superfamily
      cd00079
      Location:229 → 359
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:41 → 207
      DEAD; DEAD/DEAH box helicase
      pfam16124
      Location:364 → 427
      RecQ_Zn_bind; RecQ zinc-binding

    2. NM_179169.1 → NP_849500.1  DEAD/DEAH box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849500.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XZM7
      Conserved Domains (4) summary
      COG0514
      Location:1 → 337
      RecQ; Superfamily II DNA helicase RecQ [Replication, recombination and repair]
      cd00079
      Location:136 → 266
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam16124
      Location:271 → 334
      RecQ_Zn_bind; RecQ zinc-binding
      cl21455
      Location:36 → 114
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT72.1

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