U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    J11 Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829760, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    J11
    Official Full Name
    Chaperone DnaJ-domain superfamily protein
    Primary source
    TAIR:AT4G36040
    Locus tag
    AT4G36040
    See related
    Araport:AT4G36040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJC23; DNA J protein C23; DnaJ11; T19K4.170; T19K4_170
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See J11 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (17049152..17050608, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cold shock domain protein 1 Neighboring gene ncRNA Neighboring gene armadillo repeat only 3 Neighboring gene endonuclease/exonuclease/phosphatase family protein Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene calcium-dependent protein kinase 18

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana. Chen KM, et al. BMC Plant Biol, 2010 Mar 7. PMID 20205940, Free PMC Article
    2. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
    3. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A lack of AtJ8, AtJ11, or AtJ20 triggers a global stress response and therefore confers the plants greater tolerance to oxidative stress.
      Title: Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_119771.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Chaperone DnaJ-domain superfamily protein
    NP_195328.1
    • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G17880.1); Has 18528 Blast hits to 18528 proteins in 3080 species: Archae - 133; Bacteria - 8129; Metazoa - 2968; Fungi - 1612; Plants - 1794; Viruses - 5; Other Eukaryotes - 3887 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17049152..17050608 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119771.4 → NP_195328.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195328.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65641, Q9FYB5
      UniProtKB/TrEMBL
      A0A178V479, A0A654FWF1, Q1H544
      Conserved Domains (1) summary
      pfam00226
      Location:65 → 130
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYB5.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools