FRS9 FAR1-related sequence 9 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: FRS9
Official Full Name: FAR1-related sequence 9
Primary source: TAIR:AT4G38170
Locus tag: AT4G38170
See related: Araport:AT4G38170
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F20D10.290; F20D10_290; FAR1-related sequence 9
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Genomic context

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See FRS9 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (17904532..17906821)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

At4g38160_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
- UniSTS:510305

At4g38160_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
- UniSTS:510305

NM_119978.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: FAR1-related sequence 9

NP_195530.2

FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

17904532..17906821

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119978.4 → NP_195530.2 FAR1-related sequence 9 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_195530.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WN40, Q9SZL7

UniProtKB/TrEMBL

A0A654FWP0

Conserved Domains (3) summary

PLN03097
Location:21 → 461

FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

pfam04434
Location:345 → 381

SWIM; SWIM zinc finger

pfam10551
Location:68 → 150

MULE; MULE transposase domain