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    Chitinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823908, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Chitinase family protein
    Primary source
    TAIR:AT3G47540
    Locus tag
    AT3G47540
    See related
    Araport:AT3G47540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (17520958..17522624)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203099.1
    NM_114622.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Chitinase family protein
    NP_001190028.1
    • Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1).
    NP_190338.1
    • Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 1501 Blast hits to 1495 proteins in 261 species: Archae - 0; Bacteria - 181; Metazoa - 9; Fungi - 3; Plants - 1299; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17520958..17522624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114622.3 → NP_190338.1  Chitinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V906, A0A654FHH5, Q9SN84
      Conserved Domains (1) summary
      cd00325
      Location:34 → 214
      chitinase_GH19; Glycoside hydrolase family 19, chitinase domain

    2. NM_001203099.1 → NP_001190028.1  Chitinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190028.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JBK4, Q8GWP2
      Conserved Domains (2) summary
      cd00325
      Location:34 → 208
      chitinase_glyco_hydro_19; Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some ...
      pfam00182
      Location:33 → 210
      Glyco_hydro_19; Chitinase class I
    Nucleotide Protein
    Heading Accession and Version

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