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    LSU1 response to low sulfur 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824120, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LSU1
    Official Full Name
    response to low sulfur 1
    Primary source
    TAIR:AT3G49580
    Locus tag
    AT3G49580
    See related
    Araport:AT3G49580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RESPONSE TO LOW SULFUR 1
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    Genomic context

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    See LSU1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (18374908..18375940, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene response to low sulfur 3 Neighboring gene Autophagy-related protein 13 Neighboring gene ubiquitin-specific protease 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LSU network hubs integrate abiotic and biotic stress responses via interaction with the superoxide dismutase FSD2. Garcia-Molina A, et al. J Exp Bot, 2017 Feb 1. PMID 28207043, Free PMC Article
    2. The family of LSU-like proteins. Sirko A, et al. Front Plant Sci, 2014. PMID 25628631, Free PMC Article
    3. A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses and Phytohormone Signaling. Canales J, et al. Int J Mol Sci, 2023 Feb 1. PMID 36769138, Free PMC Article
    4. Identification of a novel cis-acting element conferring sulfur deficiency response in Arabidopsis roots. Maruyama-Nakashita A, et al. Plant J, 2005 May. PMID 15842617
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203113.1
    NM_114818.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular oxidant detoxification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cellular response to sulfur starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    response to low sulfur 1
    NP_001190042.1
    • RESPONSE TO LOW SULFUR 1 (LSU1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1).
    NP_190527.1
    • RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18374908..18375940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339428.1 → NP_001327932.1  response to low sulfur 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTU7

    2. NM_114818.4 → NP_190527.1  response to low sulfur 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190527.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IXZ4, Q9SCK1
      UniProtKB/TrEMBL
      A0A178VF66, A0A5S9XK57

    3. NM_001203113.1 → NP_001190042.1  response to low sulfur 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190042.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SCK1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCK1.1

    Gene LinkOut

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