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    ARLA1C ADP-ribosylation factor-like A1C [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824149, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARLA1C
    Official Full Name
    ADP-ribosylation factor-like A1C
    Primary source
    TAIR:AT3G49870
    Locus tag
    AT3G49870
    See related
    Araport:AT3G49870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADP-ribosylation factor-like A1C; ATARLA1C
    Summary
    A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
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    Genomic context

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    See ARLA1C in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (18492274..18494285, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene telomere repeat binding factor 3 Neighboring gene ADP-ribosylation factor-like A1B Neighboring gene glycosyl hydrolase family protein 43 Neighboring gene uncharacterized protein Neighboring gene Phototropic-responsive NPH3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A host small GTP-binding protein ARL8 plays crucial roles in tobamovirus RNA replication. Nishikiori M, et al. PLoS Pathog, 2011 Dec. PMID 22174675, Free PMC Article
    2. Analysis of the small GTPase gene superfamily of Arabidopsis. Vernoud V, et al. Plant Physiol, 2003 Mar. PMID 12644670, Free PMC Article
    3. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    4. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339443.1
    NM_114847.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to virus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytoplasm HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor-like A1C
    NP_190556.2
    • ADP-ribosylation factor-like A1C (ARLA1C); FUNCTIONS IN: GTP binding; LOCATED IN: nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor-like A1D (TAIR:AT5G67560.1); Has 19452 Blast hits to 19446 proteins in 945 species: Archae - 22; Bacteria - 898; Metazoa - 8888; Fungi - 2713; Plants - 2635; Viruses - 3; Other Eukaryotes - 4293 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18492274..18494285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114847.5 → NP_190556.2  ADP-ribosylation factor-like A1C [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190556.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VY57, Q9M2X1
      UniProtKB/TrEMBL
      A0A178VDY8, A0A5S9XJE0
      Conserved Domains (1) summary
      cd04159
      Location:21 → 179
      Arl10_like; Arf-like 9 (Arl9) and 10 (Arl10) GTPases

    2. NM_001339443.1 → NP_001327086.1  ADP-ribosylation factor-like A1C [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR83
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY57.1

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