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    ABCG20 ABC-2 type transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824519, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCG20
    Official Full Name
    ABC-2 type transporter family protein
    Primary source
    TAIR:AT3G53510
    Locus tag
    AT3G53510
    See related
    Araport:AT3G53510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP-binding cassette G20
    Summary
    Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
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    Genomic context

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    See ABCG20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19837148..19839983, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance 9 Neighboring gene valine-tRNA ligase Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene ncRNA Neighboring gene Chloroplast-targeted copper chaperone protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Importers Drive Leaf-to-Leaf Jasmonic Acid Transmission in Wound-Induced Systemic Immunity. Li M, et al. Mol Plant, 2020 Oct 5. PMID 32889174
    2. ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. Yadav V, et al. Plant Cell, 2014 Sep. PMID 25217507, Free PMC Article
    3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115211.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within organic acid transmembrane transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within suberin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ABC-2 type transporter family protein
    NP_190919.1
    • ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Pigment precursor permease (InterPro:IPR005284), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G37360.1); Has 392871 Blast hits to 356829 proteins in 4146 species: Archae - 6979; Bacteria - 312762; Metazoa - 8946; Fungi - 6247; Plants - 5690; Viruses - 12; Other Eukaryotes - 52235 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19837148..19839983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115211.5 → NP_190919.1  ABC-2 type transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190919.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFG8
      UniProtKB/TrEMBL
      A0A178VKT6
      Conserved Domains (1) summary
      TIGR00955
      Location:120 → 738
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFG8.1

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