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    Ribosomal protein L36e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824541, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L36e family protein
    Primary source
    TAIR:AT3G53740
    Locus tag
    AT3G53740
    See related
    Araport:AT3G53740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19913651..19915066, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cation/H+ exchanger 20 Neighboring gene Histone superfamily protein Neighboring gene actin 3 Neighboring gene GAMMA-TUBULIN COMPLEX PROTEIN 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    3. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001035778.3
    NM_001084810.2
    NM_115234.2
    NM_180366.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L36e family protein
    NP_001030855.1
    • Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT2G37600.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078279.1
    • Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT2G37600.2); Has 756 Blast hits to 755 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
    NP_566987.1
    • Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT2G37600.2); Has 732 Blast hits to 731 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 135; Plants - 140; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
    NP_850697.1
    • Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT2G37600.2); Has 756 Blast hits to 755 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19913651..19915066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180366.4 → NP_850697.1  Ribosomal protein L36e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850697.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L5U3, Q9M352
      UniProtKB/TrEMBL
      A0A178VA59, A0A5S9XKJ3, A0A654EZS7
      Conserved Domains (1) summary
      pfam01158
      Location:7 → 101
      Ribosomal_L36e; Ribosomal protein L36e

    2. NM_001035778.3 → NP_001030855.1  Ribosomal protein L36e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030855.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L5U3, Q9M352
      UniProtKB/TrEMBL
      A0A178VA59, A0A5S9XKJ3, A0A654EZS7
      Conserved Domains (1) summary
      pfam01158
      Location:7 → 101
      Ribosomal_L36e; Ribosomal protein L36e

    3. NM_001084810.2 → NP_001078279.1  Ribosomal protein L36e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078279.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L5U3, Q9M352
      UniProtKB/TrEMBL
      A0A178VA59, A0A5S9XKJ3, A0A654EZS7
      Conserved Domains (1) summary
      pfam01158
      Location:7 → 101
      Ribosomal_L36e; Ribosomal protein L36e

    4. NM_115234.2 → NP_566987.1  Ribosomal protein L36e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566987.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M352
      Conserved Domains (1) summary
      pfam01158
      Location:7 → 92
      Ribosomal_L36e; Ribosomal protein L36e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M352.1

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