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    BSK6 kinase with tetratricopeptide repeat domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824570, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BSK6
    Official Full Name
    kinase with tetratricopeptide repeat domain-containing protein
    Primary source
    TAIR:AT3G54030
    Locus tag
    AT3G54030
    See related
    Araport:AT3G54030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    brassinosteroid-signaling kinase 6
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    Genomic context

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    See BSK6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20010927..20013766)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FKBP-type peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Inositol phosphorylceramide synthase 1 Neighboring gene PAR1 protein Neighboring gene high cyclic electron flow 1 Neighboring gene myosin-M heavy protein Neighboring gene LOW protein: ankyrin repeat protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Shade-induced RTFL/DVL peptides negatively regulate the shade response by directly interacting with BSKs in Arabidopsis. Huang S, et al. Nat Commun, 2023 Oct 28. PMID 37898648, Free PMC Article
    2. BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis. Sreeramulu S, et al. Plant J, 2013 Jun. PMID 23496207
    3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115263.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    kinase with tetratricopeptide repeat domain-containing protein
    NP_190971.1
    • Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT5G59010.1); Has 33259 Blast hits to 32742 proteins in 1298 species: Archae - 16; Bacteria - 2417; Metazoa - 7041; Fungi - 251; Plants - 21929; Viruses - 104; Other Eukaryotes - 1501 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20010927..20013766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115263.4 → NP_190971.1  kinase with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190971.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEG7, Q9M324
      UniProtKB/TrEMBL
      A0A178VAE8, A0A5S9XKU6
      Conserved Domains (3) summary
      PLN03088
      Location:394 → 487
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:388 → 412
      TPR; TPR repeat [structural motif]
      cl21453
      Location:70 → 307
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M324.1

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