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    GHMP kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824592, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GHMP kinase family protein
    Primary source
    TAIR:AT3G54250
    Locus tag
    AT3G54250
    See related
    Araport:AT3G54250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20082046..20084762, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GRAS family transcription factor Neighboring gene suppressor of abi3-5 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 36 Neighboring gene sucrose-6F-phosphate phosphohydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Orthologs of the archaeal isopentenyl phosphate kinase regulate terpenoid production in plants. Henry LK, et al. Proc Natl Acad Sci U S A, 2015 Aug 11. PMID 26216978, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339656.1
    NM_115285.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables diphosphomevalonate decarboxylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables diphosphomevalonate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GHMP kinase family protein
    NP_566995.1
    • GHMP kinase family protein; FUNCTIONS IN: diphosphomevalonate decarboxylase activity, kinase activity, ATP binding; INVOLVED IN: isoprenoid biosynthetic process, phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: mevalonate diphosphate decarboxylase 1 (TAIR:AT2G38700.1); Has 1522 Blast hits to 1521 proteins in 681 species: Archae - 55; Bacteria - 885; Metazoa - 122; Fungi - 149; Plants - 60; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20082046..20084762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115285.3 → NP_566995.1  GHMP kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566995.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JCU3, Q8LAR8, Q9M381
      UniProtKB/TrEMBL
      A0A178V9E4
      Conserved Domains (1) summary
      PLN02407
      Location:7 → 348
      PLN02407; diphosphomevalonate decarboxylase

    2. NM_001339656.1 → NP_001325821.1  GHMP kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LME2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JCU3.1

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