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    pPLAIIIbeta patatin-like protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824660, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pPLAIIIbeta
    Official Full Name
    patatin-like protein 6
    Primary source
    TAIR:AT3G54950
    Locus tag
    AT3G54950
    See related
    Araport:AT3G54950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    patatin-like protein 6; PATATIN-LIKE PROTEIN 7; patatin-related phospholipase IIIbeta; PLA IIIA; PLP7; T15C9.3
    Summary
    Encodes pPLAIIIbeta, a member of the Group 3 patatin-related phospholipases. pPLAIIIbeta hydrolyzes phospholipids and galactolipids and additionally has acyl-CoA thioesterase activity. Alterations of pPLAIIIbeta result in changes in lipid levels and composition.
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    Genomic context

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    See pPLAIIIbeta in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (20358896..20361560, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene Papain family cysteine protease Neighboring gene PDI-like 1-3 Neighboring gene D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Patatin-related phospholipase pPLAIIIβ-induced changes in lipid metabolism alter cellulose content and cell elongation in Arabidopsis. Li M, et al. Plant Cell, 2011 Mar. PMID 21447788, Free PMC Article
    2. A pathogen-inducible patatin-like lipid acyl hydrolase facilitates fungal and bacterial host colonization in Arabidopsis. La Camera S, et al. Plant J, 2005 Dec. PMID 16297072
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Alteration of pPLAIIIbeta expression and the resulting lipid changes alter cellulose content and cell elongation in Arabidopsis.
      Title: Patatin-related phospholipase pPLAIIIβ-induced changes in lipid metabolism alter cellulose content and cell elongation in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_115352.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phospholipase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within galactolipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within phospholipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to other organism IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    patatin-like protein 6
    NP_191055.1
    • patatin-like protein 6 (PLA IIIA); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 1058 Blast hits to 1055 proteins in 202 species: Archae - 0; Bacteria - 325; Metazoa - 24; Fungi - 32; Plants - 544; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20358896..20361560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115352.4 → NP_191055.1  patatin-like protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191055.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV43
      UniProtKB/TrEMBL
      A0A178VFJ9, A0A5S9XKW9
      Conserved Domains (1) summary
      cd07199
      Location:100 → 418
      Pat17_PNPLA8_PNPLA9_like; Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV43.1

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