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    RWD domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825201, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RWD domain-containing protein
    Primary source
    TAIR:AT3G60300
    Locus tag
    AT3G60300
    See related
    Araport:AT3G60300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (22285138..22287548)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uclacyanin 3 Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene acyl-CoA synthetase family protein Neighboring gene bZIP domain class transcription factor (DUF630 and DUF632)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203211.1
    NM_115894.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RWD domain-containing protein
    NP_001190140.1
    • RWD domain-containing protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575).
    NP_191589.3
    • RWD domain-containing protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); Has 305 Blast hits to 305 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 10; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22285138..22287548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115894.5 → NP_191589.3  RWD domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191589.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMG2, A0A384KJH0, A0A5S9XMP2, A0A654FJF9, Q4TU20
      Conserved Domains (2) summary
      smart00591
      Location:13 → 113
      RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
      cd16470
      Location:120 → 204
      RING-H2_RNF25; RING finger, H2 subclass, found in RING finger protein 25 (RNF25) and similar proteins

    2. NM_001203211.1 → NP_001190140.1  RWD domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190140.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XMP2, A0A654FJF9, F4JAP8
      Conserved Domains (2) summary
      smart00591
      Location:13 → 130
      RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
      pfam13639
      Location:136 → 175
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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