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    HAT3 homeobox-leucine zipper protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825210, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HAT3
    Official Full Name
    homeobox-leucine zipper protein 3
    Primary source
    TAIR:AT3G60390
    Locus tag
    AT3G60390
    See related
    Araport:AT3G60390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    HOMEOBOX PROTEIN; homeobox-leucine zipper protein 3
    Summary
    Encodes homeobox protein HAT3.
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    Genomic context

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    See HAT3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22320580..22322661, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene cotton fiber protein Neighboring gene ncRNA Neighboring gene Mitochondrial transcription termination factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell type boundaries organize plant development. Caggiano MP, et al. Elife, 2017 Sep 12. PMID 28895530, Free PMC Article
    2. ATHB4 and HAT3, two class II HD-ZIP transcription factors, control leaf development in Arabidopsis. Bou-Torrent J, et al. Plant Signal Behav, 2012 Nov. PMID 22918502, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115903.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein 3
    NP_191598.1
    • homeobox-leucine zipper protein 3 (HAT3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 4 (TAIR:AT2G44910.1); Has 9598 Blast hits to 9528 proteins in 546 species: Archae - 0; Bacteria - 0; Metazoa - 7082; Fungi - 271; Plants - 2066; Viruses - 4; Other Eukaryotes - 175 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22320580..22322661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115903.3 → NP_191598.1  homeobox-leucine zipper protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191598.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P46602, Q546G9, Q9M220
      UniProtKB/TrEMBL
      A0A178V9W8, A0A5S9XMQ3, A0A654FJH0
      Conserved Domains (3) summary
      smart00340
      Location:217 → 260
      HALZ; homeobox associated leucin zipper
      pfam00046
      Location:165 → 215
      Homeobox; Homeobox domain
      pfam04618
      Location:19 → 118
      HD-ZIP_N; HD-ZIP protein N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P46602.2

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