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    TBL6 TRICHOME BIREFRINGENCE-LIKE 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825412, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL6
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 6
    Primary source
    TAIR:AT3G62390
    Locus tag
    AT3G62390
    See related
    Araport:AT3G62390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TRICHOME BIREFRINGENCE-LIKE 6
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (23086989..23089357, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding-like fold Neighboring gene heme binding protein Neighboring gene F-box/associated interaction domain protein Neighboring gene cytochrome C oxidase subunit Neighboring gene CP12 domain-containing protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001340156.1
    NM_116104.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 6
    NP_191798.1
    • TRICHOME BIREFRINGENCE-LIKE 6 (TBL6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 1344 Blast hits to 1327 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23086989..23089357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116104.7 → NP_191798.1  TRICHOME BIREFRINGENCE-LIKE 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191798.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZQ1
      UniProtKB/TrEMBL
      A0A178VPC1, A0A5S9XNV8, A0A654FK16
      Conserved Domains (2) summary
      pfam13839
      Location:191 → 468
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:136 → 189
      PMR5N; PMR5 N terminal Domain

    2. NM_001340156.1 → NP_001326574.1  TRICHOME BIREFRINGENCE-LIKE 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LPP7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZQ1.1

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