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    Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825469, updated on 18-Sep-2024

    Summary

    Official Full Name
    Cysteine proteinases superfamily protein
    Primary source
    TAIR:AT3G62940
    Locus tag
    AT3G62940
    See related
    Araport:AT3G62940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    OTU5; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 5
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (23262795..23264731, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase aureolysin Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein

    Bibliography

    General gene information

    NM_001203236.2
    NM_001340185.1
    NM_001340186.1
    NM_116159.4
    NM_180408.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in cytosol PubMed 

    General protein information

    Preferred Names
    Cysteine proteinases superfamily protein
    NP_001190165.1
    • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1).
    NP_191853.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 5815 Blast hits to 4395 proteins in 552 species: Archae - 16; Bacteria - 640; Metazoa - 1732; Fungi - 585; Plants - 331; Viruses - 22; Other Eukaryotes - 2489 (source: NCBI BLink).
    NP_850739.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23262795..23264731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180408.3 → NP_850739.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850739.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384K877, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:4 → 307
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:171 → 305
      OTU; OTU-like cysteine protease
    2. NM_116159.4 → NP_191853.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191853.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease
    3. NM_001203236.2 → NP_001190165.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190165.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease
    4. NM_001340185.1 → NP_001325820.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease
    5. NM_001340186.1 → NP_001325819.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384K877, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:4 → 307
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:171 → 305
      OTU; OTU-like cysteine protease
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