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    histone-lysine N-methyltransferase ATXR3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    histone-lysine N-methyltransferase ATXR3-like protein
    Primary source
    TAIR:AT5G01590
    Locus tag
    AT5G01590
    See related
    Araport:AT5G01590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.110; F7A7_110; TIC56; TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 56
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (224134..226926)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene lectin receptor kinase a4.3 Neighboring gene plectin-like protein Neighboring gene ncRNA Neighboring gene gamma interferon responsive lysosomal thiol (GILT) reductase family protein Neighboring gene ncRNA Neighboring gene ferretin 1 Neighboring gene hypothetical protein (Protein of unknown function, DUF538)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts. Köhler D, et al. Plant Physiol, 2015 Mar. PMID 25588737, Free PMC Article
    2. Uncovering the protein translocon at the chloroplast inner envelope membrane. Kikuchi S, et al. Science, 2013 Feb 1. PMID 23372012
    3. Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly. Köhler D, et al. Plant Physiol, 2016 Dec. PMID 27733515, Free PMC Article
    4. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. In the tic56-1 mutant, the assembly of functional ribosomes is furthermore hampered by a processing defect of the plastid 23S rRNA.
      Title: Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly.
    2. protein import into Tic56-deficient plastids is functional to a considerable degree, indicating the existence of alternative translocases at the inner envelope membrane.[Tic56]
      Title: Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120237.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein import into chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular anatomical structure IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase ATXR3-like protein
    NP_568092.4
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      224134..226926
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120237.6 → NP_568092.4  histone-lysine N-methyltransferase ATXR3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568092.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7Y1W1, Q7Y1Z4, Q9M016
      UniProtKB/TrEMBL
      A0A178U7L1, A0A5S9Y2P5, A0A654FXD5
      Conserved Domains (1) summary
      pfam14237
      Location:239 → 289
      DUF4339; Domain of unknown function (DUF4339)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7Y1W1.1

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