WCRKC1 WCRKC thioredoxin 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: WCRKC1
Official Full Name: WCRKC thioredoxin 1
Primary source: TAIR:AT5G06690
Locus tag: AT5G06690
See related: Araport:AT5G06690
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: WCRKC thioredoxin 1
Summary: Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.
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Genomic context

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See WCRKC1 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 2

Sequence:: Chromosome: 5; NC_003076.8 (2060435..2062081, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001036767.2

Supported by ESTs:

NM_001342899.1

Supported by ESTs:

NM_120752.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell redox homeostasis	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast stroma	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast stroma	IEA Inferred from Electronic Annotation more info
NOT located_in chloroplast thylakoid	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: WCRKC thioredoxin 1

NP_001031844.1

WCRKC thioredoxin 1 (WCRKC1); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC thioredoxin 2 (TAIR:AT5G04260.1); Has 1600 Blast hits to 1600 proteins in 488 species: Archae - 10; Bacteria - 949; Metazoa - 23; Fungi - 13; Plants - 132; Viruses - 4; Other Eukaryotes - 469 (source: NCBI BLink).

NP_568172.1

WCRKC thioredoxin 1 (WCRKC1); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC thioredoxin 2 (TAIR:AT5G04260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

2060435..2062081 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001342898.1 → NP_001330197.1 WCRKC thioredoxin 1 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA37

Conserved Domains (1) summary

cd02947
Location:105 → 149

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
NM_120752.4 → NP_568172.1 WCRKC thioredoxin 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568172.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A0JQ77, B9DGA5, Q9FG36, Q9SWQ2, Q9XFI2

UniProtKB/TrEMBL

A0A5S9Y1Z8, A0A654FYV8

Conserved Domains (1) summary

cd02947
Location:105 → 207

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
NM_001342899.1 → NP_001330198.1 WCRKC thioredoxin 1 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BA24
NM_001036767.2 → NP_001031844.1 WCRKC thioredoxin 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031844.1

Status: REVIEWED

UniProtKB/TrEMBL

F4K3Y1

Conserved Domains (1) summary

cd02947
Location:105 → 164

TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...