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    Transcription initiation Spt4-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830757, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription initiation Spt4-like protein
    Primary source
    TAIR:AT5G08565
    Locus tag
    AT5G08565
    See related
    Araport:AT5G08565
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SPT4-1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2775897..2777474)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GC-rich sequence DNA-binding factor-like protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene Pyruvate kinase family protein Neighboring gene Calcium-binding EF hand family protein Neighboring gene SNF1-related protein kinase 2.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis. Dürr J, et al. Nucleic Acids Res, 2014 Apr. PMID 24497194, Free PMC Article
    2. The zinc-finger protein SPT4 interacts with SPT5L/KTF1 and modulates transcriptional silencing in Arabidopsis. Köllen K, et al. FEBS Lett, 2015 Oct 24. PMID 26424658
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203335.1
    NM_120943.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription initiation Spt4-like protein
    NP_001190264.1
    • Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1).
    NP_568201.1
    • Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2775897..2777474
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203335.1 → NP_001190264.1  Transcription initiation Spt4-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190264.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KB46
      Conserved Domains (1) summary
      cd07973
      Location:14 → 110
      Spt4; Transcription elongation factor Spt4

    2. NM_120943.4 → NP_568201.1  Transcription initiation Spt4-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568201.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q29PX1, Q8LCQ3
      UniProtKB/TrEMBL
      A0A178UPE0, A0A654G010
      Conserved Domains (1) summary
      cd07973
      Location:14 → 110
      Spt4; Transcription elongation factor Spt4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LCQ3.3

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