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    EMF1 embryonic flower 1 (EMF1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831025, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMF1
    Official Full Name
    embryonic flower 1 (EMF1)
    Primary source
    TAIR:AT5G11530
    Locus tag
    AT5G11530
    See related
    Araport:AT5G11530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryonic flower 1; F15N18.120; F15N18_120
    Summary
    Involved in regulating reproductive development
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    Genomic context

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    See EMF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (3695792..3701549)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myb domain protein 3r-4 Neighboring gene aspartate aminotransferase 3 Neighboring gene D-arabinono-1,4-lactone oxidase family protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Temporal and spatial requirement of EMF1 activity for Arabidopsis vegetative and reproductive development. Sánchez R, et al. Mol Plant, 2009 Jul. PMID 19825645
    2. EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis. Aubert D, et al. Plant Cell, 2001 Aug. PMID 11487698, Free PMC Article
    3. Genetic regulation of shoot development in Arabidopsis: role of the EMF genes. Yang CH, et al. Dev Biol, 1995 Jun. PMID 7781888
    4. EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response. Pu L, et al. Plant Physiol, 2013 Jun. PMID 23632855, Free PMC Article
    5. EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. Kim SY, et al. PLoS Genet, 2012. PMID 22457632, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. EMF1 and ULT1 mediate histone mark deposition and modulate transcriptional activities of the target genes.EMF1 and ULT1 act antagonistically on Arabidopsis development and stress response.
      Title: EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response.
    2. to promote vegetative development and to regulate cell differentiation during shoot and root organogenesis, EMF1 binds genes required for other developmental phases. These are primarily genes trimethylated by EMF2-PRC2 on their H3K27
      Title: EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development.
    3. EMF1 interacts with EIP1, EIP6 and EIP9 during vegetative development to regulate flowering time in Arabidopsis.
      Title: EMF1 interacts with EIP1, EIP6 or EIP9 involved in the regulation of flowering time in Arabidopsis.
    4. EMF1 and EMF2 target transcription factor genes to mediate vegetative development and stress responses, and regulate flowering time genes.
      Title: Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis.
    5. Results are consistent with EMF1's primary role in repressing flowering in order to allow for vegetative growth.
      Title: Temporal and spatial requirement of EMF1 activity for Arabidopsis vegetative and reproductive development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343201.1
    NM_121191.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in epigenetic regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within hyperosmotic salinity response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within meristem determinacy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of gene expression, epigenetic IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within post-embryonic development IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within transcription initiation-coupled chromatin remodeling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    embryonic flower 1 (EMF1)
    NP_196714.1
    • embryonic flower 1 (EMF1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3695792..3701549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343200.1 → NP_001330242.1  embryonic flower 1 (EMF1) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A5YY84, Q9LYD9
      UniProtKB/TrEMBL
      A0A178UAP8, A0A5S9Y5I1, A0A654G085

    2. NM_121191.4 → NP_196714.1  embryonic flower 1 (EMF1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196714.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A5YY84, Q9LYD9
      UniProtKB/TrEMBL
      A0A178UAP8, A0A5S9Y5I1, A0A654G085

    3. NM_001343201.1 → NP_001330243.1  embryonic flower 1 (EMF1) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A5YY84, Q9LYD9
      UniProtKB/TrEMBL
      A0A178UAP8, A0A5S9Y5I1, A0A654G085
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYD9.1

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