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    tRNA/rRNA methyltransferase (SpoU) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831391, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA/rRNA methyltransferase (SpoU) family protein
    Primary source
    TAIR:AT5G15390
    Locus tag
    AT5G15390
    See related
    Araport:AT5G15390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K14.1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (4995138..4997489)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene domains rearranged methylase 1 Neighboring gene U-box domain-containing protein Neighboring gene Cyclic nucleotide-regulated ion channel family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343399.1
    NM_121543.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA/rRNA methyltransferase (SpoU) family protein
    NP_197043.1
    • tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 11780 Blast hits to 11778 proteins in 2508 species: Archae - 10; Bacteria - 9274; Metazoa - 151; Fungi - 61; Plants - 151; Viruses - 0; Other Eukaryotes - 2133 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4995138..4997489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121543.5 → NP_197043.1  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197043.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEH2, A0A5S9Y4B4, Q9LXE4
      Conserved Domains (2) summary
      COG0566
      Location:120 → 299
      SpoU; tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]
      pfam00588
      Location:154 → 296
      SpoU_methylase; SpoU rRNA Methylase family

    2. NM_001343399.1 → NP_001331160.1  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BD45
    Nucleotide Protein
    Heading Accession and Version

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