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    RGTA2 RAB geranylgeranyl transferase alpha subunit 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834187, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RGTA2
    Official Full Name
    RAB geranylgeranyl transferase alpha subunit 2
    Primary source
    TAIR:AT5G41820
    Locus tag
    AT5G41820
    See related
    Araport:AT5G41820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRGTA2; K16L22.10; K16L22_10; RAB geranylgeranyl transferase alpha subunit 2
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    Genomic context

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    See RGTA2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (16740593..16743527)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Avr9/Cf-9 rapidly elicited protein Neighboring gene RNI-like superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rab geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAB geranylgeranyl transferase alpha subunit 2
    NP_198997.1
    • RAB geranylgeranyl transferase alpha subunit 2 (RGTA2); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16740593..16743527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344422.1 → NP_001331841.1  RAB geranylgeranyl transferase alpha subunit 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ32
      UniProtKB/TrEMBL
      A0A7G2FGU6

    2. NM_123547.2 → NP_198997.1  RAB geranylgeranyl transferase alpha subunit 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198997.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ32
      UniProtKB/TrEMBL
      A0A7G2FGU6
      Conserved Domains (5) summary
      COG5536
      Location:11 → 244
      BET4; Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
      cd00116
      Location:520 → 681
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:548 → 566
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01239
      Location:87 → 114
      PPTA; Protein prenyltransferase alpha subunit repeat
      pfam13855
      Location:548 → 605
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJ32.1

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