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    RAD52-2 cobalt ion-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834838, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RAD52-2
    Official Full Name
    cobalt ion-binding protein
    Primary source
    TAIR:AT5G47870
    Locus tag
    AT5G47870
    See related
    Araport:AT5G47870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCA23.21; MCA23_21; ODB2; Organellar DNA-Binding protein 2; RAD52-2B; radiation sensitive 51-2
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    Genomic context

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    See RAD52-2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (19384368..19385869, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene adenosine monophosphate kinase Neighboring gene CRINKLY4 related 4 Neighboring gene Gut esterase (DUF1350) Neighboring gene eukaryotic release factor 1-1 Neighboring gene NADH-ubiquinone oxidoreductase B8 subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The effects of AtRad52 over-expression on homologous recombination in Arabidopsis. Samach A, et al. Plant J, 2018 Jul. PMID 29667244
    2. Identification of plant RAD52 homologs and characterization of the Arabidopsis thaliana RAD52-like genes. Samach A, et al. Plant Cell, 2011 Dec. PMID 22202891, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. effects of over-expression on homologous recombination
      Title: The effects of AtRad52 over-expression on homologous recombination in Arabidopsis.
    2. Arabidopsis thaliana mutants defective in the expression of RAD52-1 or RAD52-2 showed reduced fertility, sensitivity to mitomycin C, and decreased levels of intrachromosomal recombination compared with the wild type. [RAD52-2]
      Title: Identification of plant RAD52 homologs and characterization of the Arabidopsis thaliana RAD52-like genes.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124161.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within double-strand break repair via homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    cobalt ion-binding protein
    NP_199598.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19384368..19385869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124161.3 → NP_199598.1  cobalt ion-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199598.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAJ6, Q9FIJ4
      UniProtKB/TrEMBL
      A0A178UQ71, A0A5S9YD34
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIJ4.1

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