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    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835023, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT5G49610
    Locus tag
    AT5G49610
    See related
    Araport:AT5G49610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K6M13.17; K6M13_17
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (20131274..20132744, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene uncharacterized protein Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene ncRNA Neighboring gene myb domain protein 78

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression and interaction analysis of Arabidopsis Skp1-related genes. Takahashi N, et al. Plant Cell Physiol, 2004 Jan. PMID 14749489
    2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124339.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein
    NP_199772.1
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20131274..20132744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124339.3 → NP_199772.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199772.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LGH7, Q9FGY4
      UniProtKB/TrEMBL
      A0A178UP53, A0A5S9YCI3, A0A654GAG4
      Conserved Domains (2) summary
      smart00256
      Location:9 → 45
      FBOX; A Receptor for Ubiquitination Targets
      cl23987
      Location:97 → 323
      FBA_1; F-box associated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGY4.1

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